STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ10401.1Cytochrome c-type biogenesis protein. (218 aa)    
Predicted Functional Partners:
SEQ10375.1
Thiol-disulfide isomerase or thioredoxin.
 
  
 0.960
SEQ10424.1
Hypothetical protein.
       0.594
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.563
zupT
Zinc transporter, ZIP family; Mediates zinc uptake. May also transport other divalent cations; Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.
   
    0.539
SEP67645.1
Zinc transporter, ZIP family.
   
    0.539
SEQ12408.1
Thioredoxin reductase (NADPH).
 
  
 0.489
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.487
SEQ10346.1
Amino acid transporter.
     
 0.447
SEP99859.1
Uroporphyrinogen III methyltransferase / synthase.
  
    0.429
Your Current Organism:
Ignavigranum ruoffiae
NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae
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