STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ35460.1Helix-turn-helix domain-containing protein. (86 aa)    
Predicted Functional Partners:
SEQ57147.1
Transposase and inactivated derivatives, IS30 family.
 
     0.579
SEQ54826.1
Integrase core domain-containing protein.
 
     0.551
SEQ35484.1
Hypothetical protein.
       0.492
SEQ35513.1
Adenine-specific DNA-methyltransferase.
       0.471
SEQ35538.1
DNA (cytosine-5)-methyltransferase 1.
       0.471
Your Current Organism:
Ignavigranum ruoffiae
NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.