STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ44066.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (219 aa)    
Predicted Functional Partners:
SEQ44103.1
Signal transduction histidine kinase.
 
 0.987
SEQ44009.1
ABC-2 type transport system permease protein.
 
     0.918
SEQ44037.1
ABC-2 type transport system permease protein.
 
     0.918
SEQ45068.1
Signal transduction histidine kinase.
 0.905
SEQ43976.1
ABC-2 type transport system ATP-binding protein.
 
     0.899
SEQ12866.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.879
SEQ26606.1
Signal transduction histidine kinase.
 
  0.871
SEQ03860.1
Two-component system, OmpR family, sensor histidine kinase BraS/BceS.
 0.844
SEQ37135.1
PAS/PAC sensor signal transduction histidine kinase.
 0.831
SEP80894.1
Signal transduction histidine kinase.
 
 0.820
Your Current Organism:
Ignavigranum ruoffiae
NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae
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