STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ55404.1CHAP domain-containing protein. (380 aa)    
Predicted Functional Partners:
SEP68781.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.816
SEQ55439.1
Putative phage holin Dp-1.
       0.779
SEQ55473.1
Hypothetical protein.
       0.776
SEP90179.1
LysM domain-containing protein.
  
    0.742
SEP94834.1
Peptidase_C39 like family protein.
  
     0.704
SEP65134.1
LysM domain-containing protein.
  
   
 0.595
SEQ52768.1
CpXC protein.
  
     0.587
SEQ55507.1
Protein of unknown function.
       0.574
SEP83311.1
Beta-lactamase class A.
  
     0.534
SEQ55538.1
Hypothetical protein.
       0.521
Your Current Organism:
Ignavigranum ruoffiae
NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.