Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_00290COG2071 Predicted glutamine amidotransferases. (256 aa)    
Predicted Functional Partners:
ISM_06100
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
  0.870
ISM_08325
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.783
ISM_05425
Peptidase, M19 family protein; COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog.
      0.702
ISM_00460
COG0174 Glutamine synthetase.
 
 
 0.663
ISM_00465
Hypothetical protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.563
ISM_03380
Hypothetical protein; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
  0.550
ISM_00450
COG0174 Glutamine synthetase.
  
 
 0.546
ISM_05405
COG0174 Glutamine synthetase.
  
 
 0.546
ISM_11425
Gamma-glutamylisopropylamide synthetase, putative; COG0174 Glutamine synthetase.
  
 
 0.546
ISM_15330
GlnT-like protein; COG0174 Glutamine synthetase.
  
 
 0.546
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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