Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_00330Thioesterase superfamily protein; COG0824 Predicted thioesterase. (161 aa)    
Predicted Functional Partners:
ISM_16740
Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.
  
 
 0.839
ISM_11150
Hypothetical protein.
 
 
 0.763
ISM_00335
Hypothetical protein.
       0.728
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.644
ISM_16195
COG0236 Acyl carrier protein.
  
 0.644
ISM_03620
COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 0.620
ISM_04280
Putative hydroxlacyl-CoA dehydrogenase; COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 0.576
ISM_14885
Xanthine dehydrogenase family protein, small/large subunits; COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.
     
  0.567
ISM_03635
Hypothetical protein.
 
 
 0.565
ISM_11350
COG1536 Flagellar motor switch protein.
    
   0.558
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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