Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
ISM_00415Hypothetical protein; COG0013 Alanyl-tRNA synthetase. (144 aa)    
Predicted Functional Partners:
ISM_00425
Hypothetical protein; COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
 
     0.834
ISM_00420
COG4103 Uncharacterized protein conserved in bacteria.
 
    
0.793
ISM_09601
Hypothetical protein.
  
     0.634
ISM_02270
Lipoprotein, putative.
  
     0.633
ISM_09971
Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
     0.608
ISM_05580
Hypothetical protein.
  
     0.587
ISM_10830
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.562
ISM_11055
Hypothetical protein.
  
     0.546
ISM_00430
His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; COG4598 ABC-type histidine transport system, ATPase component.
       0.508
ISM_00200
Hypothetical protein.
  
     0.497
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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