STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00425Hypothetical protein; COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component. (252 aa)    
Predicted Functional Partners:
phnC
Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
  
 
 0.863
ISM_00415
Hypothetical protein; COG0013 Alanyl-tRNA synthetase.
 
     0.841
ISM_11950
COG3239 Fatty acid desaturase.
 
     0.811
ISM_00420
COG4103 Uncharacterized protein conserved in bacteria.
       0.810
ISM_11940
DNA binding protein, putative; COG1396 Predicted transcriptional regulators.
 
     0.775
ISM_06245
Alkylphosphonate utilization protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
  
  
 0.763
ISM_12995
COG4583 Sarcosine oxidase gamma subunit.
  
     0.738
ISM_12015
COG5598 Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family.
  
     0.661
ISM_00430
His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; COG4598 ABC-type histidine transport system, ATPase component.
  
 
  0.631
ISM_06255
Alkylphosphonate utilization protein PhnH; COG3625 Uncharacterized enzyme of phosphonate metabolism.
  
  
 0.621
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.