STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00430His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; COG4598 ABC-type histidine transport system, ATPase component. (258 aa)    
Predicted Functional Partners:
ISM_00445
His/Glu/Gln/Arg/opine family ABC transporter, permease protein; COG4160 ABC-type arginine/histidine transport system, permease component.
 
 0.972
ISM_03830
Polar amino acid uptake family ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.961
ISM_05535
Glutamate/aspartate ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 0.961
ISM_00435
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.959
ISM_03835
Polar amino acid uptake family ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.954
ISM_05315
Glutamate/glutamine/aspartate/asparagine ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.952
ISM_10346
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 0.951
ISM_10351
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 0.951
ISM_05530
Glutamate/aspartate ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.950
ISM_00440
ABC transporter, permease protein, HisMQ family protein; COG4215 ABC-type arginine transport system, permease component.
 
  
 0.903
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.