Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_00435COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (238 aa)    
Predicted Functional Partners:
ISM_00445
His/Glu/Gln/Arg/opine family ABC transporter, permease protein; COG4160 ABC-type arginine/histidine transport system, permease component.
 
 0.993
ISM_00440
ABC transporter, permease protein, HisMQ family protein; COG4215 ABC-type arginine transport system, permease component.
 
 0.964
ISM_00430
His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; COG4598 ABC-type histidine transport system, ATPase component.
 
 0.947
ISM_05535
Glutamate/aspartate ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.877
ISM_03830
Polar amino acid uptake family ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.874
ISM_03835
Polar amino acid uptake family ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.859
ISM_05530
Glutamate/aspartate ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.854
ISM_10351
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 
 0.843
ISM_10346
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 
 0.841
ISM_05315
Glutamate/glutamine/aspartate/asparagine ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.832
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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