STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00440ABC transporter, permease protein, HisMQ family protein; COG4215 ABC-type arginine transport system, permease component. (294 aa)    
Predicted Functional Partners:
ISM_00445
His/Glu/Gln/Arg/opine family ABC transporter, permease protein; COG4160 ABC-type arginine/histidine transport system, permease component.
    0.985
ISM_00435
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.964
ISM_00430
His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; COG4598 ABC-type histidine transport system, ATPase component.
 
  
  0.907
ISM_10361
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.726
ISM_02185
Glutamine ABC transporter, periplasmic glutamine-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
 0.640
ISM_03840
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
 
 0.621
ISM_05540
Glutamate/aspartate ABC transporter, ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.
 
  
  0.619
ISM_05310
Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.
 
  
  0.609
ISM_05525
Glutamate/aspartate ABC transporter, periplasmic substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.597
ISM_03825
Glutamine ABC transporter, ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.
 
  
  0.573
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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