STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00470Antibiotic biosynthesis monooxygenase domain protein. (108 aa)    
Predicted Functional Partners:
ISM_06630
COG2198 FOG: HPt domain.
  
     0.593
ISM_00475
Hypothetical protein.
       0.562
ISM_09341
COG4311 Sarcosine oxidase delta subunit.
   
    0.522
ISM_10720
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
    
  0.471
ISM_12040
Membrane protein, putative.
  
     0.440
ISM_15650
Autoinducer-binding transcriptional regulator, LuxR family protein; COG2771 DNA-binding HTH domain-containing proteins.
  
     0.429
ISM_00540
Endonuclease/exonuclease/phosphatase family protein.
  
     0.428
ISM_13610
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
  
  
  0.417
ISM_07330
COG0518 GMP synthase - Glutamine amidotransferase domain.
 
     0.413
ISM_12670
Precorrin 6A synthase; Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A.
  
  
  0.407
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.