STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00545Putative heat shock protein DnaJ; COG1076 DnaJ-domain-containing proteins 1. (232 aa)    
Predicted Functional Partners:
ISM_15105
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 
 0.996
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.960
ISM_10810
Molecular chaperone, DnaK; COG0443 Molecular chaperone.
  
 
 0.950
ISM_15460
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
 
 0.855
ISM_16445
Iron-sulfur cluster assembly family protein; Belongs to the HesB/IscA family.
  
 
 0.855
ISM_00540
Endonuclease/exonuclease/phosphatase family protein.
       0.851
ISM_16010
Putative aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
 
 0.834
ISM_17185
COG0278 Glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily.
     
 0.759
ISM_00550
Putative acetyltransferase, GNAT family protein; COG1247 Sortase and related acyltransferases.
       0.698
ISM_00555
Hypothetical protein.
       0.698
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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