STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00685OmpA domain protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (333 aa)    
Predicted Functional Partners:
tolB
Translocation protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.872
ISM_00670
Molybdenum cofactor biosynthesis domain protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA.
    
  0.820
ISM_02460
COG1360 Flagellar motor protein.
  
 
 0.806
ISM_00675
Acetyltransferase, GNAT family protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
   
   0.791
ISM_15050
COG2825 Outer membrane protein.
 
 
 0.770
ISM_00680
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.764
ISM_00755
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.719
sfsA
COG1489 DNA-binding protein, stimulates sugar fermentation; Belongs to the SfsA family.
       0.659
rpsI
COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.649
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
   0.625
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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