Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ISM_00690COG0845 Membrane-fusion protein. (395 aa)    
Predicted Functional Partners:
ISM_00695
Probable ATP-binding/permease fusion ABC transporter; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 0.992
ISM_00700
COG1538 Outer membrane protein.
 
 0.966
ISM_00705
Putative RTX family exoprotein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
    0.856
ISM_05600
Type I secretion outer membrane protein, TolC family protein; COG1538 Outer membrane protein.
 
 0.783
ISM_17455
COG1538 Outer membrane protein.
  
 0.684
ISM_17090
Hypothetical protein; COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.666
ISM_08990
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.640
ISM_02030
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
  
 0.631
ISM_08265
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.582
ISM_06395
Type I secretion target repeat protein.
 
  
 0.568
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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