STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00695Probable ATP-binding/permease fusion ABC transporter; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain. (719 aa)    
Predicted Functional Partners:
ISM_00690
COG0845 Membrane-fusion protein.
 0.996
ISM_00700
COG1538 Outer membrane protein.
 
 
 0.967
ISM_17095
Putative transport protein; COG0845 Membrane-fusion protein.
 0.961
ISM_08995
RTX secretion protein D, HlyD family protein; COG0845 Membrane-fusion protein.
 
 0.954
ISM_08260
Type I secretion membrane fusion protein, HlyD family protein; COG0845 Membrane-fusion protein.
 0.943
ISM_01110
ABC transporter, ATP binding/permease protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
0.937
ISM_01510
ABC transporter, transmembrane ATP-binding protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
0.937
ISM_09821
ABC transporter, ATP-binding protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
0.937
ISM_16160
HlyD family secretion protein; COG0845 Membrane-fusion protein.
 
 0.937
ISM_16270
Hypothetical protein; COG0464 ATPases of the AAA+ class.
   
 0.930
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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