STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00705Putative RTX family exoprotein; COG2931 RTX toxins and related Ca2+-binding proteins. (1065 aa)    
Predicted Functional Partners:
ISM_00700
COG1538 Outer membrane protein.
 
 
  0.920
ISM_00695
Probable ATP-binding/permease fusion ABC transporter; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.909
ISM_00690
COG0845 Membrane-fusion protein.
 
    0.856
ISM_14555
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
  0.791
ISM_08270
Calcium binding hemolysin protein, putative; COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
  0.774
ISM_17795
Y4BN.
  
 0.755
ISM_06395
Type I secretion target repeat protein.
   
  0.727
ISM_07370
Mannuronan C-5-epimerase, putative; COG2931 RTX toxins and related Ca2+-binding proteins.
   
  0.727
ISM_10760
Hypothetical protein.
   
  0.727
ISM_10126
FtsK/SpoIIIE family protein; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
    
 
 0.716
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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