STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00860Lipoprotein, putative; COG3087 Cell division protein. (291 aa)    
Predicted Functional Partners:
ISM_00845
DNA polymerase III subunit delta; COG0470 ATPase involved in DNA replication.
 
     0.821
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.785
ISM_00855
COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.785
ISM_03230
Membrane protein, putative.
 
     0.754
ISM_12950
Hypothetical protein.
 
     0.753
ISM_16045
Hypothetical protein.
  
     0.751
ISM_14350
Hypothetical protein.
  
     0.738
ISM_00830
Malonate transporter, putative; COG0679 Predicted permeases.
       0.736
ISM_00835
Hypothetical protein; COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I.
       0.736
ISM_00840
Hydrolase, TatD family protein; COG0084 Mg-dependent DNase.
       0.736
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.