STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00905Immunogenic protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component. (320 aa)    
Predicted Functional Partners:
ISM_00900
Hypothetical protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.898
ISM_12515
TRAP transporter, 4TM/12TM fusion protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.771
ISM_08200
Putative membrane protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.765
ISM_10286
Hypothetical protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.765
ISM_14925
Hypothetical protein; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.765
ISM_02935
Transporter; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.741
ISM_11890
Putative small integral membrane tranport protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
    0.543
ISM_00910
ABC ferric siderophore transporter, ATPase subunit; COG4604 ABC-type enterochelin transport system, ATPase component.
       0.518
ISM_00915
ABC ferric siderophore transporter, inner membrane subunit; COG4605 ABC-type enterochelin transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.518
ISM_00920
ABC ferric siderophore transporter, inner membrane subunit; COG4606 ABC-type enterochelin transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.518
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.