STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_00930COG3553 Uncharacterized protein conserved in bacteria. (99 aa)    
Predicted Functional Partners:
ISM_00925
ABC Fe+3 siderophore transporter, periplasmic substrate-binding protein; COG4607 ABC-type enterochelin transport system, periplasmic component.
 
     0.837
ISM_00915
ABC ferric siderophore transporter, inner membrane subunit; COG4605 ABC-type enterochelin transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.806
ISM_00920
ABC ferric siderophore transporter, inner membrane subunit; COG4606 ABC-type enterochelin transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.746
ISM_00910
ABC ferric siderophore transporter, ATPase subunit; COG4604 ABC-type enterochelin transport system, ATPase component.
 
     0.745
ISM_05670
Probable tonB dependent iron siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.590
ISM_00940
TonB dependent-iron siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.586
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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