Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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[Homology]
Score
ISM_00955Putative permease transmembrane protein; COG0531 Amino acid transporters. (448 aa)    
Predicted Functional Partners:
ISM_15360
COG0531 Amino acid transporters.
  
     0.765
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 0.642
ISM_00945
Hypothetical protein.
       0.613
ISM_00950
Hypothetical protein.
       0.613
ISM_12040
Membrane protein, putative.
   
 
 0.598
ISM_10576
Hypothetical protein; COG0510 Predicted choline kinase involved in LPS biosynthesis.
  
   0.597
ISM_00960
Hypothetical protein.
       0.590
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
   
 0.590
trpF
COG0135 Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
    
 
 0.577
ISM_16730
Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.
  
 
 0.572
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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