STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_01030Probable pyridine nucleotide-disulphide oxidoreductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases. (471 aa)    
Predicted Functional Partners:
ISM_01040
Nopaline dehydrogenase, putative; COG0665 Glycine/D-amino acid oxidases (deaminating).
 0.985
ISM_01035
Hypothetical protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
 
 0.978
ISM_01045
Probable DctP (periplasmic C4-dicarboxylate binding protein); COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.885
ISM_01055
Probable DctQ (C4-dicarboxylate permease, small subunit); COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.868
ISM_01025
Endoribonuclease L-PSP family protein; COG0251 Putative translation initiation inhibitor, yjgF family.
 
    0.841
ISM_06180
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
 0.820
ISM_09341
COG4311 Sarcosine oxidase delta subunit.
  
 0.779
ISM_09666
COG4311 Sarcosine oxidase delta subunit.
  
 0.779
ISM_12985
COG4311 Sarcosine oxidase delta subunit.
  
 0.779
ISM_01060
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
    0.778
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.