STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_01050Probable DctM (C4-dicarboxylate permease, large subunit); COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (432 aa)    
Predicted Functional Partners:
ISM_01055
Probable DctQ (C4-dicarboxylate permease, small subunit); COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.978
ISM_01045
Probable DctP (periplasmic C4-dicarboxylate binding protein); COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.909
ISM_12030
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.848
ISM_01040
Nopaline dehydrogenase, putative; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.798
ISM_01060
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.793
ISM_12035
Probable DctP (periplasmic C4-dicarboxylate binding protein); COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.780
ISM_01030
Probable pyridine nucleotide-disulphide oxidoreductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
     0.771
ISM_13295
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.757
ISM_05790
TRAP-T family transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.747
ISM_05785
Probable DctMQ fusion protein (C4-dicarboxylate transporter); COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.730
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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