Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ISM_01145Cytochrome, putative; COG3038 Cytochrome B561; Belongs to the UPF0312 family. (410 aa)    
Predicted Functional Partners:
ISM_01150
Hypothetical protein; Belongs to the UPF0312 family.
 
  
 0.839
ISM_01140
COG0331 (acyl-carrier-protein) S-malonyltransferase.
       0.585
ISM_13705
Hypothetical protein; COG0435 Predicted glutathione S-transferase.
     
 0.520
ISM_09726
Hypothetical protein.
  
     0.496
ISM_05645
Hypothetical protein; COG3443 Predicted periplasmic or secreted protein.
 
    0.460
trpC
COG0134 Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
     
 0.425
ISM_11235
Hypothetical protein.
  
    0.422
ISM_12935
COG1741 Pirin-related protein; Belongs to the pirin family.
     
 0.402
ISM_16900
COG1741 Pirin-related protein; Belongs to the pirin family.
     
 0.402
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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