Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ISM_01150 | ISM_01155 | ISM_01150 | ISM_01155 | Hypothetical protein; Belongs to the UPF0312 family. | Hypothetical protein. | 0.440 |
ISM_01150 | rplI | ISM_01150 | ISM_01170 | Hypothetical protein; Belongs to the UPF0312 family. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.434 |
ISM_01155 | ISM_01150 | ISM_01155 | ISM_01150 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0312 family. | 0.440 |
ISM_01155 | rplI | ISM_01155 | ISM_01170 | Hypothetical protein. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.404 |
ISM_01155 | rpsF | ISM_01155 | ISM_01160 | Hypothetical protein. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.444 |
ISM_01155 | rpsR | ISM_01155 | ISM_01165 | Hypothetical protein. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.413 |
rplI | ISM_01150 | ISM_01170 | ISM_01150 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Hypothetical protein; Belongs to the UPF0312 family. | 0.434 |
rplI | ISM_01155 | ISM_01170 | ISM_01155 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Hypothetical protein. | 0.404 |
rplI | rpsF | ISM_01170 | ISM_01160 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplI | rpsR | ISM_01170 | ISM_01165 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
rpsF | ISM_01155 | ISM_01160 | ISM_01155 | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | Hypothetical protein. | 0.444 |
rpsF | rplI | ISM_01160 | ISM_01170 | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.999 |
rpsF | rpsR | ISM_01160 | ISM_01165 | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
rpsR | ISM_01155 | ISM_01165 | ISM_01155 | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | Hypothetical protein. | 0.413 |
rpsR | rplI | ISM_01165 | ISM_01170 | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.999 |
rpsR | rpsF | ISM_01165 | ISM_01160 | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |