Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_01175COG3750 Uncharacterized protein conserved in bacteria. (84 aa)    
Predicted Functional Partners:
ISM_12425
COG3814 Uncharacterized protein conserved in bacteria.
  
   
 0.787
ISM_12070
COG3820 Uncharacterized protein conserved in bacteria.
  
   
 0.747
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.733
ISM_01180
Hypothetical protein.
 
     0.715
ISM_17110
COG2927 DNA polymerase III, chi subunit.
  
     0.713
ISM_16365
Lipoprotein, SmpA/OmlA family protein; COG2913 Small protein A (tmRNA-binding).
  
     0.703
ISM_11115
Hypothetical protein.
  
     0.647
ISM_07725
COG0625 Glutathione S-transferase.
  
     0.620
ISM_06785
Transporter, Tim44 family protein; COG4395 Uncharacterized protein conserved in bacteria.
  
     0.605
ISM_14450
COG3807 Uncharacterized protein conserved in bacteria.
  
     0.574
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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