STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_01290COG4765 Uncharacterized protein conserved in bacteria. (129 aa)    
Predicted Functional Partners:
ISM_01300
COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit.
 
     0.943
ISM_01295
Hypothetical protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
       0.853
ISM_06785
Transporter, Tim44 family protein; COG4395 Uncharacterized protein conserved in bacteria.
  
     0.642
ISM_11710
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.642
clpX
ATP-dependent protease ATP-binding subunit; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
       0.616
atpF
ATP synthase F0, B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.599
ISM_02105
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
     0.597
ISM_06525
Hypothetical protein; COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination.
  
     0.559
ISM_17110
COG2927 DNA polymerase III, chi subunit.
  
     0.558
ISM_16365
Lipoprotein, SmpA/OmlA family protein; COG2913 Small protein A (tmRNA-binding).
  
     0.516
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.