STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_01535Ribonuclease BN; COG1295 Predicted membrane protein. (315 aa)    
Predicted Functional Partners:
ISM_01540
Phospholipase D/Transphosphatidylase; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
 
  
 0.745
ISM_01530
Hypothetical protein.
 
     0.681
ISM_06185
Hypothetical protein.
 
     0.624
ISM_14215
COG3871 Uncharacterized stress protein (general stress protein 26).
 
    0.536
ISM_06190
Hypothetical protein; COG0516 IMP dehydrogenase/GMP reductase.
 
    0.508
ISM_04040
Hypothetical protein; COG1834 N-Dimethylarginine dimethylaminohydrolase.
   
    0.503
ISM_07130
Proteinase; COG0693 Putative intracellular protease/amidase.
 
  
 0.459
carB
COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); Belongs to the CarB family.
       0.430
ISM_06180
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
    0.405
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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