STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_01615Oxidoreductase, GMC family protein; COG2303 Choline dehydrogenase and related flavoproteins. (543 aa)    
Predicted Functional Partners:
ISM_04860
WD domain/cytochrome c family protein; COG2319 FOG: WD40 repeat.
  
 0.922
ISM_00035
Hypothetical protein; COG0457 FOG: TPR repeat.
    
 0.921
ISM_10426
COG3258 Cytochrome c.
  
 
 0.760
ISM_02565
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
   
   0.714
ISM_10456
COG2010 Cytochrome c, mono- and diheme variants.
   
   0.714
ISM_13230
COG2010 Cytochrome c, mono- and diheme variants.
   
   0.714
ISM_17500
Probable c-type cytochrome; COG2010 Cytochrome c, mono- and diheme variants.
   
   0.714
ISM_10441
COG3258 Cytochrome c.
   
 
 0.704
ISM_04905
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
   
   0.697
ISM_16860
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
  
  
 
0.657
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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