Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_01615Oxidoreductase, GMC family protein; COG2303 Choline dehydrogenase and related flavoproteins. (543 aa)    
Predicted Functional Partners:
ISM_04860
WD domain/cytochrome c family protein; COG2319 FOG: WD40 repeat.
  
 0.717
ISM_00035
Hypothetical protein; COG0457 FOG: TPR repeat.
    
 0.702
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
 0.628
ISM_02565
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
   
   0.589
ISM_10456
COG2010 Cytochrome c, mono- and diheme variants.
   
   0.589
ISM_13230
COG2010 Cytochrome c, mono- and diheme variants.
   
   0.589
ISM_17500
Probable c-type cytochrome; COG2010 Cytochrome c, mono- and diheme variants.
   
   0.589
ISM_03915
2-oxoisovalerate dehydrogenase beta subunit; COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
   
 
  0.550
ISM_16955
Possible 2-oxoisovalerate dehydrogenase; COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
   
 
  0.550
ISM_04905
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
   
   0.546
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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