Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_01635ABC peptide transporter, inner membrane subunit; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (427 aa)    
Predicted Functional Partners:
ISM_01640
Hypothetical protein; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.989
ISM_01630
Peptide ABC transporter, ATP-binding protein; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 0.988
ISM_01645
Hypothetical protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
  0.962
ISM_11380
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.944
ISM_04035
COG0747 ABC-type dipeptide transport system, periplasmic component.
 
  0.935
ISM_04495
COG0747 ABC-type dipeptide transport system, periplasmic component.
 
  0.935
ISM_10785
Hypothetical protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
  0.935
ISM_16875
COG0747 ABC-type dipeptide transport system, periplasmic component.
 
  0.935
ISM_00235
Peptide/nickel/opine uptake family ABC transporter, permease protein; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.929
ISM_01325
Oligopeptide/dipeptide ABC transporter, permease protein; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.913
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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