Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| ISM_00095 | ISM_00100 | Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein. | COG3904 Predicted periplasmic protein. | 0.965 |
| ISM_00095 | ISM_01665 | Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein. | COG5622 Protein required for attachment to host cells. | 0.456 |
| ISM_00100 | ISM_00095 | COG3904 Predicted periplasmic protein. | Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein. | 0.965 |
| ISM_00100 | ISM_01665 | COG3904 Predicted periplasmic protein. | COG5622 Protein required for attachment to host cells. | 0.586 |
| ISM_00100 | ISM_15775 | COG3904 Predicted periplasmic protein. | COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. | 0.493 |
| ISM_01565 | ISM_01665 | Response regulator receiver protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. | COG5622 Protein required for attachment to host cells. | 0.514 |
| ISM_01565 | ISM_15775 | Response regulator receiver protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. | COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. | 0.656 |
| ISM_01650 | ISM_01655 | ATPase, AAA family protein; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase. | Periplasmic serine protease, DO/DeqQ family protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. | 0.803 |
| ISM_01650 | ISM_01660 | ATPase, AAA family protein; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase. | Hypothetical protein. | 0.523 |
| ISM_01650 | ISM_01665 | ATPase, AAA family protein; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase. | COG5622 Protein required for attachment to host cells. | 0.527 |
| ISM_01655 | ISM_01650 | Periplasmic serine protease, DO/DeqQ family protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. | ATPase, AAA family protein; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase. | 0.803 |
| ISM_01655 | ISM_01660 | Periplasmic serine protease, DO/DeqQ family protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. | Hypothetical protein. | 0.516 |
| ISM_01655 | ISM_01665 | Periplasmic serine protease, DO/DeqQ family protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. | COG5622 Protein required for attachment to host cells. | 0.516 |
| ISM_01655 | ISM_15775 | Periplasmic serine protease, DO/DeqQ family protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. | COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. | 0.527 |
| ISM_01660 | ISM_01650 | Hypothetical protein. | ATPase, AAA family protein; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase. | 0.523 |
| ISM_01660 | ISM_01655 | Hypothetical protein. | Periplasmic serine protease, DO/DeqQ family protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. | 0.516 |
| ISM_01660 | ISM_01665 | Hypothetical protein. | COG5622 Protein required for attachment to host cells. | 0.946 |
| ISM_01660 | ISM_06190 | Hypothetical protein. | Hypothetical protein; COG0516 IMP dehydrogenase/GMP reductase. | 0.406 |
| ISM_01665 | ISM_00095 | COG5622 Protein required for attachment to host cells. | Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein. | 0.456 |
| ISM_01665 | ISM_00100 | COG5622 Protein required for attachment to host cells. | COG3904 Predicted periplasmic protein. | 0.586 |
page 1 of 2