ISM_01850 protein (Roseovarius nubinhibens) - STRING interaction network

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Score

ISM_01850

ISxac3 transposase. (439 aa)

Predicted Functional Partners:

ISM_08450

0.649

rpsJ

0.585

rplW

0.482

rplD

0.482

rplC

0.477

Your Current Organism:

Roseovarius nubinhibens

NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ISM_01850	ISM_08450	ISM_01850	ISM_08450	ISxac3 transposase.	Glutamate dehydrogenase.	0.649
ISM_01850	rplC	ISM_01850	ISM_01840	ISxac3 transposase.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.477
ISM_01850	rplD	ISM_01850	ISM_01830	ISxac3 transposase.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.482
ISM_01850	rplW	ISM_01850	ISM_01825	ISxac3 transposase.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.482
ISM_01850	rpsJ	ISM_01850	ISM_01845	ISxac3 transposase.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.585
ISM_08450	ISM_01850	ISM_08450	ISM_01850	Glutamate dehydrogenase.	ISxac3 transposase.	0.649
rplC	ISM_01850	ISM_01840	ISM_01850	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	ISxac3 transposase.	0.477
rplC	rplD	ISM_01840	ISM_01830	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplW	ISM_01840	ISM_01825	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rpsJ	ISM_01840	ISM_01845	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998
rplD	ISM_01850	ISM_01830	ISM_01850	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	ISxac3 transposase.	0.482
rplD	rplC	ISM_01830	ISM_01840	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.999
rplD	rplW	ISM_01830	ISM_01825	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.998
rplD	rpsJ	ISM_01830	ISM_01845	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998
rplW	ISM_01850	ISM_01825	ISM_01850	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	ISxac3 transposase.	0.482
rplW	rplC	ISM_01825	ISM_01840	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.999
rplW	rplD	ISM_01825	ISM_01830	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.998
rplW	rpsJ	ISM_01825	ISM_01845	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.997
rpsJ	ISM_01850	ISM_01845	ISM_01850	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	ISxac3 transposase.	0.585
rpsJ	rplC	ISM_01845	ISM_01840	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.998

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