STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_01995COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism. (170 aa)    
Predicted Functional Partners:
ISM_02000
Thioesterase family protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
  
 0.972
ISM_01990
DNA-damage-inducible protein F; COG0534 Na+-driven multidrug efflux pump.
 
     0.876
ISM_02010
Transcriptional regulator, merR family protein; COG0789 Predicted transcriptional regulators.
  
    0.595
ISM_02005
Putative membrane protein.
       0.554
ISM_05580
Hypothetical protein.
  
     0.547
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
  0.546
ISM_06840
Hypothetical protein; COG0802 Predicted ATPase or kinase.
    
   0.493
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.489
ISM_15745
COG3749 Uncharacterized protein conserved in bacteria.
  
     0.467
ISM_11540
Nitroreductase family protein; COG0778 Nitroreductase.
  
    0.456
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.