STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02000Thioesterase family protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism. (159 aa)    
Predicted Functional Partners:
ISM_01995
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
  
 0.969
ISM_01990
DNA-damage-inducible protein F; COG0534 Na+-driven multidrug efflux pump.
 
     0.868
ISM_02010
Transcriptional regulator, merR family protein; COG0789 Predicted transcriptional regulators.
  
    0.560
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.556
ISM_06605
COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
   
   0.552
ISM_02005
Putative membrane protein.
       0.536
ISM_07105
Iron-sulfur cluster-binding protein; COG0633 Ferredoxin.
 
 
  0.430
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.426
ISM_15395
COG3825 Uncharacterized protein conserved in bacteria.
  
     0.418
ISM_15745
COG3749 Uncharacterized protein conserved in bacteria.
  
     0.416
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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