STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02030Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins. (404 aa)    
Predicted Functional Partners:
ISM_07370
Mannuronan C-5-epimerase, putative; COG2931 RTX toxins and related Ca2+-binding proteins.
 
    
0.851
ISM_08270
Calcium binding hemolysin protein, putative; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.770
ISM_08995
RTX secretion protein D, HlyD family protein; COG0845 Membrane-fusion protein.
 
  
 0.739
ISM_17095
Putative transport protein; COG0845 Membrane-fusion protein.
 
  
 0.717
ISM_08990
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
 
 0.713
ISM_08260
Type I secretion membrane fusion protein, HlyD family protein; COG0845 Membrane-fusion protein.
 
  
 0.708
ISM_08265
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
 
 0.683
ISM_17090
Hypothetical protein; COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
 
 0.647
ISM_14560
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
0.643
ISM_00690
COG0845 Membrane-fusion protein.
 
  
 0.631
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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