Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02045Hypothetical protein. (56 aa)    
Predicted Functional Partners:
ISM_02050
COG0625 Glutathione S-transferase; Belongs to the GST superfamily.
       0.775
ISM_07940
Membrane protein, putative.
  
     0.735
ISM_02060
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /3-hydroxybutyryl-CoA epimerase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
       0.708
ISM_14350
Hypothetical protein.
  
     0.708
ISM_07100
COG3409 Putative peptidoglycan-binding domain-containing protein.
  
     0.664
ISM_02485
Hypothetical protein; COG1372 Intein/homing endonuclease.
  
     0.648
ISM_02055
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.644
ISM_05595
Hypothetical protein.
  
     0.633
ISM_06490
Translocase.
  
     0.631
ISM_02035
Transcriptional regulator, merR family protein; COG0789 Predicted transcriptional regulators.
       0.614
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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