STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02175Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein. (529 aa)    
Predicted Functional Partners:
ISM_02180
Hypothetical protein.
 
 
 
0.918
ISM_17795
Y4BN.
  
 0.755
ISM_02030
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
  
  0.743
ISM_10126
FtsK/SpoIIIE family protein; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
    
 
 0.716
ISM_16525
Lipoprotein, putative.
  
     0.691
ISM_00480
Hypothetical protein; COG5434 Endopolygalacturonase.
  
 
  0.689
ISM_11140
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.668
ISM_02410
Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
   
   0.658
ISM_06050
Hypothetical protein.
 
 
0.649
ISM_02185
Glutamine ABC transporter, periplasmic glutamine-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
     0.645
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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