Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02180Hypothetical protein. (363 aa)    
Predicted Functional Partners:
ISM_02175
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
 
  
0.876
ISM_16525
Lipoprotein, putative.
  
     0.745
ISM_16175
COG0776 Bacterial nucleoid DNA-binding protein.
  
     0.663
ISM_07100
COG3409 Putative peptidoglycan-binding domain-containing protein.
  
     0.603
ISM_08940
Hypothetical protein.
  
     0.596
ISM_14400
Hypothetical protein; COG1154 Deoxyxylulose-5-phosphate synthase.
  
     0.593
ISM_13950
Hypothetical protein.
  
     0.564
ISM_05195
Hypothetical protein.
   
   0.558
ISM_05200
Hypothetical protein.
   
   0.558
ISM_09596
Hypothetical protein; COG1204 Superfamily II helicase.
  
     0.555
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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