Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_02185Glutamine ABC transporter, periplasmic glutamine-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (353 aa)    
Predicted Functional Partners:
ISM_06925
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
   
 0.692
ISM_05535
Glutamate/aspartate ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 0.667
ISM_02175
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.645
ISM_00440
ABC transporter, permease protein, HisMQ family protein; COG4215 ABC-type arginine transport system, permease component.
  
 0.640
ISM_03830
Polar amino acid uptake family ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.637
ISM_05530
Glutamate/aspartate ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.613
ISM_05315
Glutamate/glutamine/aspartate/asparagine ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.604
ISM_03835
Polar amino acid uptake family ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.593
ISM_02505
COG0287 Prephenate dehydrogenase.
    
 0.579
ISM_10351
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 
 0.579
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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