close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02185Glutamine ABC transporter, periplasmic glutamine-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (353 aa)    
Predicted Functional Partners:
ISM_05535
Glutamate/aspartate ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 0.725
ISM_03830
Polar amino acid uptake family ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.700
ISM_05530
Glutamate/aspartate ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 0.699
ISM_03835
Polar amino acid uptake family ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.683
ISM_05315
Glutamate/glutamine/aspartate/asparagine ABC transporter, permease protein; COG0765 ABC-type amino acid transport system, permease component.
 
 0.673
ISM_10351
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 0.672
ISM_06925
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
   
 0.668
ISM_10346
ABC polar amino acid transporter, inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 0.662
ISM_05540
Glutamate/aspartate ABC transporter, ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.
 
 0.653
ISM_02175
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.645
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.