STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02345NLP/P60 family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (279 aa)    
Predicted Functional Partners:
ISM_02350
Cytosol aminopeptidase family protein; COG0260 Leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.845
ISM_02340
Agmatinase; COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
       0.780
ISM_05100
COG2177 Cell division protein.
   
 
 0.760
ISM_02410
Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
    
 
 0.750
ISM_05105
Cell division ATP-binding protein FtsE; COG2884 Predicted ATPase involved in cell division.
  
 
 0.688
ISM_02355
Hypothetical protein.
       0.654
ISM_02330
Hypothetical protein.
  
     0.636
ISM_15105
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
   
 0.610
ISM_05190
COG5281 Phage-related minor tail protein.
  
   0.591
ISM_12820
Phage-related protein, probable phage tail tape meausure protein, lambda family protein; COG0840 Methyl-accepting chemotaxis protein.
  
   0.591
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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