STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02405Hypothetical protein; COG4942 Membrane-bound metallopeptidase. (387 aa)    
Predicted Functional Partners:
ISM_05100
COG2177 Cell division protein.
 
 
 
 0.989
ISM_02410
Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
  
  
 0.928
ISM_15780
Hypothetical protein.
 
 
 
 0.910
ISM_16510
Peptidase, M48 family protein; COG0501 Zn-dependent protease with chaperone function.
 
 
 
 0.907
ISM_15195
Peptidase, M48 family protein; COG4783 Putative Zn-dependent protease, contains TPR repeats.
   
 
 0.893
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.853
ISM_09696
Hypothetical protein; COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
  
     0.633
ISM_09736
COG1573 Uracil-DNA glycosylase.
   
   0.623
ISM_15205
N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase.
 
   
 0.595
ISM_05105
Cell division ATP-binding protein FtsE; COG2884 Predicted ATPase involved in cell division.
 
   
 0.572
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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