STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02410Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family. (444 aa)    
Predicted Functional Partners:
ISM_02405
Hypothetical protein; COG4942 Membrane-bound metallopeptidase.
  
  
 0.928
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.858
pheT
phenylalanyl-tRNA synthetase beta subunit; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.719
ISM_00630
Hypothetical protein.
   
   0.658
ISM_00635
Type I secretion target repeat protein.
   
   0.658
ISM_00705
Putative RTX family exoprotein; COG2931 RTX toxins and related Ca2+-binding proteins.
   
   0.658
ISM_01770
Hypothetical protein; COG0480 Translation elongation factors (GTPases).
   
   0.658
ISM_01775
Hypothetical protein.
   
   0.658
ISM_02175
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
   
   0.658
ISM_02485
Hypothetical protein; COG1372 Intein/homing endonuclease.
   
   0.658
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.