STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02430Membrane protein, putative; COG3182 Uncharacterized iron-regulated membrane protein. (466 aa)    
Predicted Functional Partners:
ISM_12435
Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase.
     
 0.650
ISM_06475
COG3453 Uncharacterized protein conserved in bacteria.
     
  0.641
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
     
  0.632
ISM_02425
Hypothetical protein; COG0504 CTP synthase (UTP-ammonia lyase).
       0.574
ISM_08760
Thiosulfate sulfurtransferase, putative; COG2897 Rhodanese-related sulfurtransferase.
     
 0.468
ISM_12615
CobG; COG0155 Sulfite reductase, beta subunit (hemoprotein); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.457
ISM_15735
COG0155 Sulfite reductase, beta subunit (hemoprotein).
     
 0.457
ISM_04420
Selenium-binding protein, putative.
    
  0.450
ISM_15740
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
     
 0.448
ISM_05230
Hypothetical protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
  
 0.438
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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