STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02450COG2951 Membrane-bound lytic murein transglycosylase B. (460 aa)    
Predicted Functional Partners:
ISM_02765
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
   
 
 0.572
ISM_02455
Hypothetical protein; COG2378 Predicted transcriptional regulator.
       0.511
ISM_02460
COG1360 Flagellar motor protein.
 
     0.509
ISM_08395
COG0837 Glucokinase; Belongs to the bacterial glucokinase family.
  
  
  0.473
ISM_02820
Phosphomannomutase/phosphoglucomutase; COG1109 Phosphomannomutase.
  
  
  0.471
secB
Preprotein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.455
ISM_02465
Hypothetical protein.
  
    0.420
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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