STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02460COG1360 Flagellar motor protein. (627 aa)    
Predicted Functional Partners:
ISM_02465
Hypothetical protein.
 
     0.949
ISM_11350
COG1536 Flagellar motor switch protein.
 
  
 0.891
ISM_05855
Possible FlgD protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.874
ISM_17360
TraF protein; COG0840 Methyl-accepting chemotaxis protein.
  
  
 0.861
ISM_04860
WD domain/cytochrome c family protein; COG2319 FOG: WD40 repeat.
  
 
 0.844
ISM_02470
Cation transport protein ChaC, putative; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
 
     0.781
ISM_00685
OmpA domain protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
 0.761
ISM_01295
Hypothetical protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
   
   0.749
ISM_06925
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
  
  
 0.718
ISM_06485
OmpA domain protein; COG0226 ABC-type phosphate transport system, periplasmic component.
  
 0.712
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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