STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02485Hypothetical protein; COG1372 Intein/homing endonuclease. (356 aa)    
Predicted Functional Partners:
ISM_02480
Hypothetical protein.
 
    0.842
ISM_07100
COG3409 Putative peptidoglycan-binding domain-containing protein.
  
     0.758
ISM_07005
core-2/I-branching enzyme family protein.
  
     0.745
ISM_08935
Hypothetical protein.
  
     0.731
ISM_08940
Hypothetical protein.
  
     0.729
ISM_09596
Hypothetical protein; COG1204 Superfamily II helicase.
  
     0.720
ISM_16175
COG0776 Bacterial nucleoid DNA-binding protein.
  
     0.720
ISM_07940
Membrane protein, putative.
  
     0.718
ISM_17795
Y4BN.
  
 0.703
ISM_00750
Lipoprotein, putative.
  
     0.695
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.