Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
ISM_02525Arsenate reductase; COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (154 aa)    
Predicted Functional Partners:
ISM_02520
Hypothetical protein.
 
    0.946
ISM_02530
Hypothetical protein; Belongs to the UPF0262 family.
 
     0.944
ISM_02515
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.845
ISM_07410
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 0.830
ISM_02540
Hypothetical protein.
 
     0.748
ISM_10720
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
   
 
 0.737
ISM_06815
Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
  
 
 0.668
ISM_07435
COG3118 Thioredoxin domain-containing protein.
  
 
 0.668
ISM_09125
Hypothetical protein.
  
 
 0.660
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
 
   0.653
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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