STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02590COG5430 Uncharacterized secreted protein. (300 aa)    
Predicted Functional Partners:
ISM_02600
COG3121 P pilus assembly protein, chaperone PapD.
 
 
 0.979
ISM_02595
COG3188 P pilus assembly protein, porin PapC.
 
  
 0.944
ISM_02605
COG5430 Uncharacterized secreted protein.
 
     0.856
rpmI
COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
       0.509
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.499
ISM_03030
Hypothetical protein; COG0170 Dolichol kinase.
  
     0.499
ISM_03025
Hypothetical protein; COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
  
     0.475
ISM_03035
Hypothetical protein; COG5379 S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase.
  
     0.456
ISM_08110
Hypothetical protein; COG3598 RecA-family ATPase.
  
     0.411
ISM_03045
Putative manganese transport system permease protein.
  
     0.406
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.