STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02595COG3188 P pilus assembly protein, porin PapC. (783 aa)    
Predicted Functional Partners:
ISM_02600
COG3121 P pilus assembly protein, chaperone PapD.
 
 0.998
ISM_02590
COG5430 Uncharacterized secreted protein.
 
 
 0.976
ISM_02605
COG5430 Uncharacterized secreted protein.
 
 
 0.933
ISM_17380
COG3702 Type IV secretory pathway, VirB3 components.
   
    0.649
ISM_17330
Hypothetical protein; COG3704 Type IV secretory pathway, VirB6 components.
   
    0.620
ISM_17375
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
   
    0.618
ISM_17355
COG3736 Type IV secretory pathway, component VirB8.
   
    0.617
ISM_17350
Conjugal transfer protein, trbG; COG3504 Type IV secretory pathway, VirB9 components.
   
    0.599
ISM_13985
Hypothetical protein; COG5572 Predicted integral membrane protein.
   
    0.590
ISM_17345
Conjugal transfer protein; COG2948 Type IV secretory pathway, VirB10 components.
   
    0.537
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.