STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02600COG3121 P pilus assembly protein, chaperone PapD. (133 aa)    
Predicted Functional Partners:
ISM_02595
COG3188 P pilus assembly protein, porin PapC.
 
 
 0.998
ISM_02605
COG5430 Uncharacterized secreted protein.
 
 
 0.983
ISM_02590
COG5430 Uncharacterized secreted protein.
 
 
 0.979
ISM_03030
Hypothetical protein; COG0170 Dolichol kinase.
  
     0.516
ISM_03025
Hypothetical protein; COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
  
     0.487
ISM_03035
Hypothetical protein; COG5379 S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase.
  
     0.482
ISM_17380
COG3702 Type IV secretory pathway, VirB3 components.
   
    0.461
ISM_14555
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
    0.460
ISM_08110
Hypothetical protein; COG3598 RecA-family ATPase.
  
     0.456
ISM_02610
Hypothetical protein.
 
     0.439
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.